課程資訊
課程名稱
生醫資料探勘演算法
Data Mining Algorithms for Bioinformatics 
開課學期
100-1 
授課對象
電機資訊學院  生醫電子與資訊學研究所  
授課教師
歐陽彥正 
課號
CSIE7725 
課程識別碼
922 U0400 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期一3,4,@(10:20~) 
上課地點
資310 
備註
總人數上限:25人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1001biomed_dm 
課程簡介影片
 
核心能力關聯
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課程概述

教學目標:
This course discusses design of advanced machine learning algorithms for biomedical applications. It is expected that the students have taken the “bioinformatics algorithm” course and are familiar with calculus and probability.

週次 主 題
1 Introduction
2 The conventional kernel density estimators
3 The relaxed variable kernel density estimator
4 The relaxed variable kernel density estimator
5 Machine learning with the RVKDE
6 Machine learning with the RBF network
7 Machine learning with the SVM
8 Analysis of protein tertiary substructures
9 Advanced clustering algorithms for protein sequence analysis
10 Prediction of polypeptide motifs
11 Prediction of protein structures
12 Advanced algorithms for protein docking
13 The EM algorithm
14 Bayesian network
15 Feature selection
16 Critical issues for modern bioinformatics applications
17 Critical issues for modern bioinformatics applications 

課程目標
教學目標:
This course discusses design of advanced machine learning algorithms for biomedical applications. It is expected that the students have taken the “bioinformatics algorithm” course and are familiar with calculus and probability.

週次 主 題
1 Introduction
2 The conventional kernel density estimators
3 The relaxed variable kernel density estimator
4 The relaxed variable kernel density estimator
5 Machine learning with the RVKDE
6 Machine learning with the RBF network
7 Machine learning with the SVM
8 Analysis of protein tertiary substructures
9 Advanced clustering algorithms for protein sequence analysis
10 Prediction of polypeptide motifs
11 Prediction of protein structures
12 Advanced algorithms for protein docking
13 The EM algorithm
14 Bayesian network
15 Feature selection
16 Critical issues for modern bioinformatics applications
17 Critical issues for modern bioinformatics applications 
課程要求
 
預期每週課後學習時數
 
Office Hours
 
指定閱讀
 
參考書目
 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
第2週
9/19  Introduction 
第3週
9/26  Microarray Data Analysis 
第4週
10/03  Decision Tree 
第5週
10/10  萌節 
第6週
10/17  Normal Distribution 
第7週
10/24  EM Algorithm 
第8週
10/31  Feature Selection and Microarray Overfitting 
第9週
11/07  本週進行期中考試 
第10週
11/14  Kernel Function and RVKDE 
第11週
11/21  Microarray Overfitting Extention 
第12週
11/28  1) Introduction of Project 1; 2) dataset of Project 1; 3) Kernel Density Estimation.v1 
第14週
12/12  Optimization Algorithms 
第15週
12/19  Introduction to Protein Structures and RBF network 
第16週
12/26  Project2 release